##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index6_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	24382081	
Filtered Sequences	0	
Sequence length	90	
%GC	50	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.120974661678794	33.0	31.0	34.0	31.0	34.0
2	32.3749418681695	34.0	31.0	34.0	31.0	34.0
3	32.386245825366586	34.0	31.0	34.0	30.0	34.0
4	36.04063389831245	37.0	35.0	37.0	35.0	37.0
5	35.92190338470289	37.0	35.0	37.0	35.0	37.0
6	35.89310674507234	37.0	35.0	37.0	35.0	37.0
7	35.83651727676567	37.0	35.0	37.0	35.0	37.0
8	35.83336356728534	37.0	35.0	37.0	35.0	37.0
9	37.536315911673	39.0	37.0	39.0	35.0	39.0
10-14	37.70203851754901	39.2	37.2	39.4	34.2	39.4
15-19	38.76564130026473	40.0	38.0	41.0	34.4	41.0
20-24	38.62314726950501	40.0	38.0	41.0	34.0	41.0
25-29	38.38279859705166	40.0	38.0	41.0	33.8	41.0
30-34	38.07206673622321	40.0	37.6	41.0	33.0	41.0
35-39	37.7628547046497	40.0	37.0	41.0	32.6	41.0
40-44	37.539561639549966	39.6	36.6	41.0	31.8	41.0
45-49	37.09469026044168	39.0	35.4	40.8	31.0	41.0
50-54	36.74331990776341	39.0	35.0	40.4	30.8	41.0
55-59	36.49007579787796	38.2	35.0	40.2	30.8	41.0
60-64	35.77629861864539	36.8	34.2	40.0	30.0	41.0
65-69	35.00311586201359	35.6	34.0	39.0	29.0	41.0
70-74	34.14969667273274	35.0	33.0	37.6	28.8	39.8
75-79	33.030363044073226	34.8	32.4	36.2	27.0	38.8
80-84	32.73563497717852	35.0	33.0	35.4	27.0	37.0
85-89	31.929831846592588	35.0	32.4	35.0	26.0	36.0
90	31.43984748471634	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
11	19.0
12	119.0
13	992.0
14	4398.0
15	10981.0
16	18272.0
17	25253.0
18	31889.0
19	38884.0
20	47196.0
21	56698.0
22	66477.0
23	79661.0
24	100076.0
25	131148.0
26	174131.0
27	232743.0
28	306801.0
29	398779.0
30	508823.0
31	641644.0
32	814348.0
33	1049353.0
34	1418559.0
35	2044766.0
36	3182140.0
37	4700295.0
38	5269053.0
39	2959466.0
40	69117.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	24.17508663774548	12.717538484398204	10.995528224308087	52.111846653548234
2	22.297559424890764	19.309541297972064	33.82127226958191	24.57162700755526
3	25.70076770723549	21.309116313738766	22.338478819752915	30.651637159272827
4	27.994681832120893	26.442472240166865	19.422099368794647	26.140746558917595
5	29.75418710158497	28.838986303096938	21.652187932605095	19.754638662713
6	25.028171303343633	32.20882991898846	21.374992561135368	21.388006216532542
7	22.15937297899616	18.958558162747348	36.66086608145669	22.221202776799803
8	22.154757832196523	22.278689009358963	28.56410820717067	27.002444951273848
9	21.846947646352312	20.98788334371546	31.28346472452801	25.88170428540422
10-14	25.033001711051572	25.845549211494795	24.259155503179844	24.86229357427379
15-19	25.296065484008096	24.82017418199128	24.729649347119395	25.15411098688123
20-24	25.106002819326456	25.040150178145833	25.0300844362434	24.823762566284316
25-29	24.99672747828738	25.01379101924889	24.982315094156345	25.007166408307384
30-34	25.03641586753385	24.95257340601873	24.924978095848296	25.086032630599124
35-39	25.078257197152404	25.08725679840879	24.866767798089604	24.9677182063492
40-44	25.049698291151184	24.90869222519565	25.006111465969838	25.035498017683334
45-49	24.9553721728925	24.980921834106223	24.955327056786075	25.108378936215203
50-54	25.009427250231926	25.06516963546232	24.972666511324505	24.952736602981247
55-59	25.017386664556252	24.982885668555312	24.93878164924998	25.060946017638457
60-64	24.931942284786967	25.017633534258994	25.043302520050815	25.007121660903227
65-69	24.954542720786606	25.12620614730524	25.016805830999942	24.90244530090821
70-74	25.000744645250062	25.042459545008832	24.949655131426095	25.007140678315015
75-79	24.983404121388674	25.010488418099975	25.027039385897652	24.979068074613703
80-84	24.921672133381694	25.145537286251407	25.035099692543778	24.897690887823114
85-89	25.020915011963318	25.110564019393962	24.955330941818154	24.913190026824566
90	24.737766500514052	25.264286260067497	25.161151959201046	24.836795280217405
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.2869332912937
2	46.86918643244603
3	56.35240486650832
4	54.13542839103849
5	49.50882576429797
6	46.41617751987617
7	44.38057575579597
8	49.157202783470375
9	47.72865193175653
10-14	49.89529528532536
15-19	50.45017647088933
20-24	49.92976538561077
25-29	50.00389388659477
30-34	50.122448498132975
35-39	50.04597540350161
40-44	50.08519630883451
45-49	50.0637511091077
50-54	49.96216385321318
55-59	50.078332682194706
60-64	49.939063945690194
65-69	49.85698802169482
70-74	50.00788532356507
75-79	49.96247219600237
80-84	49.81936302120481
85-89	49.934105038787884
90	49.57456178073146
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	5.0
1	4.5
2	2.5
3	1.5
4	4.5
5	9.5
6	14.5
7	18.5
8	24.5
9	38.5
10	48.0
11	69.0
12	119.0
13	195.5
14	310.5
15	513.5
16	911.0
17	1550.0
18	2586.5
19	4575.5
20	5905.0
21	7913.5
22	13177.0
23	21197.5
24	32949.5
25	49745.5
26	72471.0
27	103172.0
28	139501.5
29	180936.0
30	203826.0
31	228344.5
32	278998.5
33	335341.5
34	395879.0
35	454121.5
36	514507.5
37	580230.0
38	637091.0
39	684419.5
40	708136.0
41	726506.5
42	761197.5
43	791580.5
44	812666.5
45	825516.5
46	828969.5
47	825961.5
48	830177.5
49	836772.0
50	838516.0
51	833393.0
52	831090.5
53	823905.0
54	821161.0
55	825601.5
56	815999.0
57	803556.5
58	783721.0
59	753683.0
60	737819.0
61	720339.5
62	680288.5
63	628349.5
64	568361.0
65	506887.5
66	441709.0
67	373751.5
68	311437.0
69	252257.5
70	221761.0
71	195666.0
72	147820.0
73	107935.0
74	74312.0
75	46905.5
76	27341.5
77	14536.0
78	6788.5
79	2886.0
80	1572.0
81	1115.5
82	462.5
83	204.0
84	119.0
85	79.5
86	47.5
87	25.0
88	19.5
89	13.0
90	5.0
91	6.0
92	6.0
93	2.5
94	1.0
95	1.0
96	0.5
97	0.5
98	0.0
99	0.0
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.41107237729215973
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0025961688832056625
8	0.0
9	0.0017922998451198647
10-14	0.0019128802008327344
15-19	1.747184746043621E-4
20-24	0.0015216092506624024
25-29	0.0011147530844475499
30-34	0.001647931528075885
35-39	0.004104653741409521
40-44	0.0035288210222909197
45-49	0.0022327872670097355
50-54	0.0026010905303776163
55-59	7.226618597485588E-4
60-64	5.257959728704043E-4
65-69	2.764325161580753E-4
70-74	0.005512244832588326
75-79	0.0017439036479289852
80-84	0.0021671653047170172
85-89	0.0022582157773981637
90	0.001148384340122568
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.4382081E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.43299628079963
#Duplication Level	Relative count
1	100.0
2	30.989298973575018
3	16.16073378466914
4	9.88571012593725
5	6.912509489491363
6	5.0042117742489
7	3.882111918801152
8	3.129192275294044
9	2.5624226541457378
10++	29.462660801381045
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5671785	2.8715012	5.004691	2
CCAGG	5362435	2.5890057	5.4532385	1
CCTGG	5376555	2.5830824	6.1823063	1
CTTCT	5309210	2.558045	5.421864	1
CTGGA	5075905	2.4814074	8.440964	1
TCCAG	4937940	2.3874753	5.49541	2
CTCCT	4899065	2.3311913	6.9071813	1
CAGGA	4597740	2.2587378	5.4211926	1
CTGGG	4647365	2.257525	7.955492	1
CTTCA	4549080	2.202615	5.3248544	1
CTCCA	4579865	2.1900508	7.2589755	1
CCCAG	4545550	2.1705306	6.958527	1
CAGAA	4269845	2.1110196	5.0420766	1
CTCTG	4274230	2.0564308	6.218378	1
CTGAA	3799100	1.8690636	5.4406443	1
CTCAG	3629530	1.754864	5.660611	1
>>END_MODULE
